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About me
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This is the end of my GSoC journey (August 26, 2023).
This is the eighth week of my GSoC journey.
This is the eleventh week of my GSoC journey.
This is the fifth week of my GSoC journey.
This is the fourth week of my GSoC journey.
This is the ninth week of my GSoC journey.
This is the first week of my GSoC journey.
This is the seventh week of my GSoC journey.
This is the sixth week of my GSoC journey.
This is the tenth week of my GSoC journey.
This is the third week of my GSoC journey.
This is the last two weeks of my GSoC journey.
This is the second week of my GSoC journey.
This is the zero-th week of my GSoC journey.
Short description of portfolio item number 1
Short description of portfolio item number 2
Deep learning models have been extensively developed for brain tumor segmentations from MRI images, mostly in a supervised way where ground truth labels are available. However, this condition is not warranted in datasets that do not have ground truth annotations. In this work, we developed a novel method that predicted the Dice score of the tumor segmentations without the ground truth, while also generating the error map that highlighted the areas where the predicted segmentation and the ground truth disagreed.
A weekly notebook of my coding journey with GSoC 2023
In this work I am investigating novel multi-modality deep learning models for more accurate transcription factors binding sites predictions
I was responsible for testing a Nextflow pipeline for identifying genetic risk loci enriched at open chromatin regions. The tool included the ENCODE pipeline for ATAC-seq and ChIP-seq, HOMER for motif enrichment analysis, and RELI for genetic risk loci identification.
Large-scale labeled biomedical datasets are difficult to access, and these datasets remain small in the medical imaging domain compared to other common computer visiom datasets. Therefore, we presented a method of using different models of generative adversarial networks to generate synthetic liver ultrasound images. Our results showed that the synthetic images had good quality compared with the real images, and this synthetic dataset would be promising as a data augmentation method for liver disease classification task.
Published in Journal 1, 2009
This paper is about the number 1. The number 2 is left for future work.
Recommended citation: Your Name, You. (2009). "Paper Title Number 1." Journal 1. 1(1). http://academicpages.github.io/files/paper1.pdf
Published in Journal 1, 2010
This paper is about the number 2. The number 3 is left for future work.
Recommended citation: Your Name, You. (2010). "Paper Title Number 2." Journal 1. 1(2). http://academicpages.github.io/files/paper2.pdf
Published in Journal 1, 2015
This paper is about the number 3. The number 4 is left for future work.
Recommended citation: Your Name, You. (2015). "Paper Title Number 3." Journal 1. 1(3). http://academicpages.github.io/files/paper3.pdf
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.